ODAMNet
stable
Quickstart
Installation
Usage
Approaches
Overview of the approaches
Overlap analysis
Active Module Identification
Random Walk with Restart
Networks
Network downloading
Network creation
Network visualisation
Networks used
Use-cases
Use-case 1: data are retrieved automatically by queries
Use-case 2: data are provided by the user
File formats
Input files
Output files
Code description
Input parameters for each approach
Code functions in details
ODAMNet
Index
Edit on GitHub
Index
A
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C
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D
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M
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O
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R
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T
A
allHumanGenesFromWP() (in module odamnet.WP_functions)
C
createNetworkandBipartiteFiles() (in module odamnet.methods_functions)
CTDrequest() (in module odamnet.CTD_functions)
CTDrequestFromFeaturesList() (in module odamnet.CTD_functions)
D
DOMINO() (in module odamnet.methods_functions)
DOMINOandOverlapAnalysis() (in module odamnet.methods_functions)
DOMINOOutput() (in module odamnet.methods_functions)
downloadNDExNetwork() (in module odamnet.methods_functions)
M
module
odamnet.CTD_functions
odamnet.methods_functions
odamnet.WP_functions
O
odamnet.CTD_functions
module
odamnet.methods_functions
module
odamnet.WP_functions
module
overlap() (in module odamnet.methods_functions)
overlapAnalysis() (in module odamnet.methods_functions)
R
rareDiseasesWPrequest() (in module odamnet.WP_functions)
readBackgroundsFile() (in module odamnet.WP_functions)
readCTDFile() (in module odamnet.CTD_functions)
readFeaturesFile() (in module odamnet.CTD_functions)
readGMTFile() (in module odamnet.WP_functions)
readRequestResultsWP() (in module odamnet.WP_functions)
RWR() (in module odamnet.methods_functions)
T
targetGenesExtraction() (in module odamnet.CTD_functions)